PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA102G00071

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

HRT-like

Protein Properties

Length: 433aa MW: 48961.9 Da PI: 9.2459

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA102G00071	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56.7	4e-18	233	263	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGviledG C+++PvkgRKRC eHKG+Ri AA102G00071 233 VCGVILEDGGSCNETPVKGRKRCIEHKGQRI 263 7*****************************7 PP
2	HRT-like	48.3	1.7e-15	285	315	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil d +C ++P++gRKRCe HKGmRi AA102G00071 285 ICGVILPDMKPCGNKPAPGRKRCEDHKGMRI 315 8*****************************7 PP
3	HRT-like	57.5	2.2e-18	401	431	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l +G vC+r+PvkgRKRCeeHKGmRi AA102G00071 401 TCGVKLCNGFVCERSPVKGRKRCEEHKGMRI 431 7*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MGYGGDDFPF AVVPTVFKRE DYKRTKHDAV FSKWQILIGS KDWEDFKDGK DGVGRYRVQN 60 LPSKSFPGLY ELGVAVTSEV HGRKLEVDDV LVSYLGQAEN VRSRLQSYGR SGAHLRNVNY 120 NESLDKKSVT SSLFEDIFSN GGSILYRWAP MRSKREAEAT EGMLLCTFDY AWNKGSNGER 180 RELDLLRKLG NGEFMNQRKS EISRVLFPFL KNQVGIEVKG EKHVLKEERY SSVCGVILED 240 GGSCNETPVK GRKRCIEHKG QRICRVSPEK QRSKKPEIYI DSDVICGVIL PDMKPCGNKP 300 APGRKRCEDH KGMRINAFLF LLNSQDLNKT VKDEKFDTIT HLEVNEGEAL SRFCEAITKS 360 GLPCTRNSPK GSKRCWQHRE KISDVESSET VSPVTVKVVV TCGVKLCNGF VCERSPVKGR 420 KRCEEHKGMR IVS

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MGYGGDDFPF AVVPTVFKRE DYKRTKHDAV FSKWQILIGS KDWEDFKDGK DGVGRYRVQN  60
LPSKSFPGLY ELGVAVTSEV HGRKLEVDDV LVSYLGQAEN VRSRLQSYGR SGAHLRNVNY  120
NESLDKKSVT SSLFEDIFSN GGSILYRWAP MRSKREAEAT EGMLLCTFDY AWNKGSNGER  180
RELDLLRKLG NGEFMNQRKS EISRVLFPFL KNQVGIEVKG EKHVLKEERY SSVCGVILED  240
GGSCNETPVK GRKRCIEHKG QRICRVSPEK QRSKKPEIYI DSDVICGVIL PDMKPCGNKP  300
APGRKRCEDH KGMRINAFLF LLNSQDLNKT VKDEKFDTIT HLEVNEGEAL SRFCEAITKS  360
GLPCTRNSPK GSKRCWQHRE KISDVESSET VSPVTVKVVV TCGVKLCNGF VCERSPVKGR  420
KRCEEHKGMR IVS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866167.1	0.0	hypothetical protein ARALYDRAFT_918835
Swissprot	F4K933	0.0	ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	D7MM69	0.0	D7MM69_ARALL; Putative uncharacterized protein
STRING	scaffold_802235.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	0.0	effector of transcription2